Structure of PDB 4d1q Chain B

Receptor sequence

>4d1qB (length=505) Species: 7370 (Musca domestica) [Search protein sequence]

HMQSRELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIK
VGAEYGEHVNVEELLPSPITLSRKVTSDAKEKKALIGREIKSAVEKDGAS
ATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYK
KLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLEN
SFEETPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTML
RSILDNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQT
CSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLS
IWHYTAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELISHSKDISTTSFF
FPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKL
SKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDSLLFLNSFY
KNFCK

3D structure

PDB

4d1q Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica.

Chain

Resolution

3.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	B	R107 S148 K585 R586 I589 T593	R31 S72 K481 R482 I485 T489
BS02	dna	B	S143 T146 R149 E584 N587 R588	S67 T70 R73 E480 N483 R484
BS03	dna	B	P108 F109 S110 K372 Q375 T376 C377 S378 R573 K605	P32 F33 S34 K296 Q299 T300 C301 S302 R469 K501
BS04	dna	B	K91 R308 S309 S310 K312 T317 R318 W319 Q375 E572 R573 S576	K15 R232 S233 S234 K236 T241 R242 W243 Q299 E468 R469 S472

Gene Ontology

	Molecular Function
GO:0046983	protein dimerization activity

View graph for
Molecular Function

External links

PDB	RCSB:4d1q, PDBe:4d1q, PDBj:4d1q
PDBsum	4d1q
PubMed	25036632
UniProt	Q25442

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