Structure of PDB 4d05 Chain B

Receptor sequence
>4d05B (length=249) Species: 1365007 (Psychromonas sp. SP041) [Search protein sequence]
IQLATNYRQDIDVTQYYVSEKLDGIRAYWNGHQLISKQGNIFTAPTWFIA
SFPTTAMDGELWIARQQFETVSGIARTQDNQNEQWKQIKFMIFDLPKSTV
SFEQRINKMQTLVTDTNSPYLQMIEQQKIPNTVALFDLLNKVVMGKGEGL
MLHHQDALYQTSRDLMKLKKFEDAEATVIAYLPGKGKYEGLLGAILVKNE
EGVTFKIGSGFSDEERSTPPPIGSLITYRFTGKTNNNIPRFASFVRIRV
3D structure
PDB4d05 Enzyme-Adenylate Structure of a Bacterial ATP-Dependent DNA Ligase with a Minimized DNA-Binding Surface
ChainB
Resolution1.65 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.1: DNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP B S23 K25 L26 R30 E64 F97 I128 K173 S19 K21 L22 R26 E60 F93 I124 K167
BS02 MG B F97 F106 H157 F93 F102 H153
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003910 DNA ligase (ATP) activity
GO:0005524 ATP binding
Biological Process
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006310 DNA recombination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4d05, PDBe:4d05, PDBj:4d05
PDBsum4d05
PubMed25372693
UniProtA0A0A6YVN6

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