Structure of PDB 4cjr Chain B

Receptor sequence
>4cjrB (length=148) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence]
SPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG
RWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNK
ELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRGYSAGERIVDIIATDIQ
3D structure
PDB4cjr Interrogating HIV Integrase for Compounds that Bind- a Sampl Challenge.
ChainB
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FYM B Q95 A128 Q39 A72 MOAD: Kd=793uM
PDBbind-CN: -logKd/Ki=3.10,Kd=793uM
BS02 FYM B Q168 A169 E170 H171 T174 Q112 A113 E114 H115 T118 MOAD: Kd=793uM
PDBbind-CN: -logKd/Ki=3.10,Kd=793uM
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4cjr, PDBe:4cjr, PDBj:4cjr
PDBsum4cjr
PubMed24532034
UniProtP12497|POL_HV1N5 Gag-Pol polyprotein (Gene Name=gag-pol)

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