Structure of PDB 4c0b Chain B

Receptor sequence
>4c0bB (length=430) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
ITGDNEWHKLVIPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEY
TFQNWKFPIYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKI
RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPI
FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERIN
ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELH
HIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSAV
DDVYKRSLQRTSIREYFYGSLDTALSPYAIGVDYEDLTIWKPSNVFDNEV
GRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNE
KRRKLRVLLPVPGRLPSKAMILTSYRYLEQ
3D structure
PDB4c0b Structural basis for ATP loss by Clp1p in a G135R mutant protein.
ChainB
Resolution2.77 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B D33 Q35 K72 P74 Q133 G135 K136 T137 S138 G312 V313 S314 D17 Q19 K56 P58 Q117 G119 K120 T121 S122 G296 V297 S298
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005849 mRNA cleavage factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4c0b, PDBe:4c0b, PDBj:4c0b
PDBsum4c0b
PubMed24508575
UniProtQ08685|CLP1_YEAST mRNA cleavage and polyadenylation factor CLP1 (Gene Name=CLP1)

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