Structure of PDB 4bae Chain B

Receptor sequence
>4baeB (length=183) Species: 1772 (Mycolicibacterium smegmatis) [Search protein sequence]
GLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGFATRVDVKIHA
DGSVEVRDDGRGIPVEMHATGMPTIDVVMTQLGVGVSVVNALSTRLEATV
LRDGYEWFQYYDRSVPGKLKQGGETKETGTTIRFWADPEIFETTDYNFET
VARRLQEMAFLNKGLTIELTDERDGKHRVFHYP
3D structure
PDB4bae Optimization of Pyrrolamides as Mycobacterial Gyrb ATPase Inhibitors: Structure Activity Relationship and in Vivo Efficacy in the Mouse Model of Tuberculosis.
ChainB
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 5.6.2.2: DNA topoisomerase (ATP-hydrolyzing).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RWX B V49 N52 E56 D79 R82 G83 I84 P85 V125 R141 T169 V28 N31 E35 D58 R61 G62 I63 P64 V86 R102 T130 MOAD: ic50=3nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524 ATP binding
Biological Process
GO:0006265 DNA topological change

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4bae, PDBe:4bae, PDBj:4bae
PDBsum4bae
PubMed24126580
UniProtP0C559|GYRB_MYCSM DNA gyrase subunit B (Gene Name=gyrB)

[Back to BioLiP]