Structure of PDB 4awd Chain B

Receptor sequence
>4awdB (length=292) Species: 310297 (Phocaeicola plebeius) [Search protein sequence]
EYSLAEEHIKNLPEAPEGYKWVVNEDYTDEFNGKRLNAAKWHAKSPYWTN
GRPPATFKAENVSVKKGCLRIINTVLSPTEGLDGKPGDKYRLAGGAVASV
KNQAHYGYYETRMKASLTTMSSTFWLSNRPVMKEIMKIKTWSSQELDIIE
TMGIIRSVNPDNPWNKTWNMQMNSNTHYWYQEQGGKRTDNTAKRSDVVSY
MTDPSAEDFHTYGCWWVDANTVKFYYDGKYMYTIKPTTKYTDTPFDRPMF
IHIVTETYDWEKQVPTAEDLKDKDKSTTYYDWVRAYKLVPIE
3D structure
PDB4awd Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.178: beta-porphyranase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B E54 N56 G91 D309 E30 N32 G67 D281
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0033916 beta-agarase activity
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4awd, PDBe:4awd, PDBj:4awd
PDBsum4awd
PubMed23150581
UniProtB5CY92|PORB_PHOPM Beta-porphyranase B (Gene Name=BACPLE_01689)

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