Structure of PDB 3vrd Chain B

Receptor sequence
>3vrdB (length=400) Species: 1050 (Thermochromatium tepidum) [Search protein sequence]
GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGG
DRELASLRVGYDGLRAHGIQVVHDSALGIDPDKKLVKTAGGAEFAYDRCV
VAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVI
IAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFT
KGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVIN
LIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPM
PKSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCYSILAPGYGISIAA
VYRPNAEGKAIEAVPDSGGITPVDAPDWVLEREVQYAHSWYNNIVHDTFG
3D structure
PDB3vrd Structure Analysis and Comparative Characterization of the Cytochrome c' and Flavocytochrome c from Thermophilic Purple Photosynthetic Bacterium Thermochromatium tepidum
ChainB
Resolution1.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEC B T336 Y338 Y387 T335 Y337 Y386
BS02 FAD B V8 G9 G11 T12 G13 I33 E34 P35 Y39 C42 Y43 A77 A103 P104 G105 W128 R160 C161 G293 D294 K303 S304 A305 W391 V7 G8 G10 T11 G12 I32 E33 P34 Y38 C41 Y42 A76 A102 P103 G104 W127 R159 C160 G292 D293 K302 S303 A304 W390
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0050660 flavin adenine dinucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:3vrd, PDBe:3vrd, PDBj:3vrd
PDBsum3vrd
PubMed22827326
UniProtD0G7Q4

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