Structure of PDB 3vqa Chain B

Receptor sequence
>3vqaB (length=139) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence]
SPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG
RWPVKTVHTDNGSNFTSTTVKAACDWAGIKQEESMNKELKKIIGQVRDQA
EHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDI
3D structure
PDB3vqa Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC B E87 E96 K103 E31 E40 K47
BS02 FRU B V88 K173 V32 K104
BS03 MWP B N184 H185 G197 E198 N115 H116 G128 E129
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:3vqa, PDBe:3vqa, PDBj:3vqa
PDBsum3vqa
PubMed23139382
UniProtQ72498

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