Structure of PDB 3vq5 Chain B

Receptor sequence
>3vq5B (length=132) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence]
SPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAG
RWPVKTVHTDNGSNFTGATVRAACDWAGIKQESMNKELKKIIGQVRDQAE
HLKTAVQMAVFIHNHKRGYSAGERIVDIIATD
3D structure
PDB3vq5 Parallel screening of low molecular weight fragment libraries: do differences in methodology affect hit identification?
ChainB
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MMJ B H185 G197 E198 H115 G122 E123
BS02 MMJ B R107 P109 I204 D207 R51 P53 I129 D132
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:3vq5, PDBe:3vq5, PDBj:3vq5
PDBsum3vq5
PubMed23139382
UniProtQ72498

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