Structure of PDB 3qib Chain B

Receptor sequence
>3qibB (length=165) Species: 10090 (Mus musculus) [Search protein sequence]
SRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTE
LGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVY
PLLVCSVSDFYPGNIEVRWNGKEEKTGIVSTGLVRNGDWTFQTLVMLETV
TCQVEHPSLTDPVTV
3D structure
PDB3qib Structural basis of specificity and cross-reactivity in T cell receptors specific for cytochrome c-I-E(k).
ChainB
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B E9 C11 S13 Y30 D57 N60 W61 E74 V78 H81 N82 I85 F86 E7 C9 S11 Y28 D55 N58 W59 E72 V76 H79 N80 I83 F84
BS02 FUC B G20 T21 Q22 G18 T19 Q20
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3qib, PDBe:3qib, PDBj:3qib
PDBsum3qib
PubMed21490152
UniProtP04230|HB21_MOUSE H-2 class II histocompatibility antigen, E-B beta chain (Gene Name=H2-Eb1)

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