Structure of PDB 3ped Chain B

Receptor sequence
>3pedB (length=172) Species: 9606 (Homo sapiens) [Search protein sequence]
SDLIPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREKDPQKMYATI
YELKEDKSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTLGNIKSYPGLTS
YLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRF
SKSLGLPENHIVFPVPIDQCID
3D structure
PDB3ped Siderocalin Recognitin of Carboxymycobactins: Interference by the immune system in intracellular iron acquisition by Mycobacteria tuberculosis
ChainB
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZYF B Y52 T54 W79 R81 K125 Y132 F133 K134 Y138 Y47 T49 W74 R76 K120 Y127 F128 K129 Y133
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0036094 small molecule binding
GO:0042802 identical protein binding
GO:0140315 iron ion sequestering activity
GO:1903981 enterobactin binding
Biological Process
GO:0006826 iron ion transport
GO:0006915 apoptotic process
GO:0015891 siderophore transport
GO:0042742 defense response to bacterium
GO:0045087 innate immune response
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0031410 cytoplasmic vesicle
GO:0035580 specific granule lumen
GO:0060205 cytoplasmic vesicle lumen
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3ped, PDBe:3ped, PDBj:3ped
PDBsum3ped
PubMed
UniProtP80188|NGAL_HUMAN Neutrophil gelatinase-associated lipocalin (Gene Name=LCN2)

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