Structure of PDB 3pde Chain B

Receptor sequence
>3pdeB (length=287) Species: 387344 (Levilactobacillus brevis ATCC 367) [Search protein sequence]
SLINARLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRL
RPLLTVATMQSLGVTFVPERHWRPVMALELLHTYSLIHDDLPAMDNDALR
RGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATA
AGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ
APEAQWPAYLQFADAFGLAFQIYDDILDVVSDADEAKNTYPGKLGLIGAN
QALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTER
3D structure
PDB3pde Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily.
ChainB
Resolution1.75 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.10: (2E,6E)-farnesyl diphosphate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 DMA B G47 K48 R51 H82 R101 T184 F220 G47 K48 R51 H82 R101 T184 F220
BS02 MG B D89 D95 D89 D95
BS03 MG B D89 D95 D89 D95
BS04 DMA B S85 D89 R100 K183 S85 D89 R100 K183
Gene Ontology
Molecular Function
GO:0004337 geranyltranstransferase activity
GO:0004659 prenyltransferase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0008299 isoprenoid biosynthetic process
GO:0045337 farnesyl diphosphate biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:3pde, PDBe:3pde, PDBj:3pde
PDBsum3pde
PubMed23493556
UniProtQ03RR4

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