Structure of PDB 3or3 Chain B

Receptor sequence
>3or3B (length=173) Species: 585532 (Helicobacter pylori 118) [Search protein sequence]
HEFMAKRKSDIILKSVDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLE
INAIDEKNMKNEGLVYVFVIQGKIFKIGHSITPITKRVQSYNCGKVEYRK
NGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTSKR
AENVILENFIKNHNKKPIGCTQT
3D structure
PDB3or3 Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis.
ChainB
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B Q86 C90 Y95 T100 T168 Q169 Q89 C93 Y98 T103 T171 Q172
BS02 dna B R4 K5 S6 S102 T103 T104 R7 K8 S9 S105 T106 T107
BS03 dna B Y63 K73 H76 S77 I78 K83 R84 Q86 S87 S102 K146 Q169 T170 Y66 K76 H79 S80 I81 K86 R87 Q89 S90 S105 K149 Q172 T173
BS04 CA B G75 H76 G78 H79
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity

View graph for
Molecular Function
External links
PDB RCSB:3or3, PDBe:3or3, PDBj:3or3
PDBsum3or3
PubMed20935048
UniProtQ9KJ88

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