Structure of PDB 3oqg Chain B

Receptor sequence
>3oqgB (length=175) Species: 585532 (Helicobacter pylori 118) [Search protein sequence]
HHHEFMAKRKSDIILKSVDDLKDEIDYKDFEYKEYFNLLCELVPNNSLEK
LEINAIDEKNMKNEGLVYVFVIQGKIFKIGHSITPITKRVQSYNCGKVEY
RKNGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTS
KRAENVILENFIKNHNKKPIGCTQT
3D structure
PDB3oqg Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis.
ChainB
Resolution1.75 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B Q86 C90 K92 Y95 T100 T168 Q169 Q91 C95 K97 Y100 T105 T173 Q174
BS02 dna B R4 S6 H76 S77 I78 R84 Q86 S87 S102 T103 T104 K146 Q169 R9 S11 H81 S82 I83 R89 Q91 S92 S107 T108 T109 K151 Q174
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity

View graph for
Molecular Function
External links
PDB RCSB:3oqg, PDBe:3oqg, PDBj:3oqg
PDBsum3oqg
PubMed20935048
UniProtQ9KJ88

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