Structure of PDB 3o84 Chain B

Receptor sequence
>3o84B (length=436) Species: 557601 (Acinetobacter baumannii AB900) [Search protein sequence]
KQLIEFVRWSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGER
QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG
VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL
SPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTG
TPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALG
VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD
QIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDS
DEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQS
PEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD
3D structure
PDB3o84 Biochemical and structural characterization of bisubstrate inhibitors of BasE, the self-standing nonribosomal peptide synthetase adenylate-forming enzyme of acinetobactin synthesis.
ChainB
Resolution2.1 Å
3D
structure
Catalytic site residues are labeled in the structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HTJ B H241 N242 F243 S247 V286 G314 F337 G338 M339 H239 N240 F241 S245 V284 G312 F335 G336 M337 MOAD: Kd=58nM
BS02 CA B Q305 L307 N330 Q303 L305 N328
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 12:48:41 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3o84', asym_id = 'B', title = 'Biochemical and structural characterization of b...ylate-forming enzyme of acinetobactin synthesis. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3o84', asym_id='B', title='Biochemical and structural characterization of b...ylate-forming enzyme of acinetobactin synthesis. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0008668,0019290', uniprot = '', pdbid = '3o84', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008668,0019290', uniprot='', pdbid='3o84', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>