Structure of PDB 3ndh Chain B

Receptor sequence
>3ndhB (length=208) Species: 2303 (Thermoplasma acidophilum) [Search protein sequence]
DHLKDLFRDRLIIDKVQRRLPYMFQLAELESSRAGKVGMEVGSLRERIIS
SLLIYKFGEKNVETDLPITEPEIDVKLFGSPISIKTITGKEPAGVKLIWT
VDATKARQFLETWHPRFDLILVHINWSSLGGVYYIPDYVQQRIFDEIGKD
KYIKLPKQGTNPRGVEISNEALKEIMTDEETMSIKIEWKKTNVQYNAFKR
WVDLWSEG
3D structure
PDB3ndh DNA intercalation without flipping in the specific ThaI-DNA complex
ChainB
Resolution1.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B M47 T168 N169 R171 M39 T160 N161 R163
BS02 dna B K44 V45 M47 E48 G50 S51 R53 T77 E78 D82 T94 I95 T96 K104 W107 K113 R171 K36 V37 M39 E40 G42 S43 R45 T69 E70 D74 T86 I87 T88 K96 W99 K105 R163
BS03 NA B D82 I92 D74 I84
External links