Structure of PDB 3ly0 Chain B

Receptor sequence
>3ly0B (length=352) Species: 272943 (Cereibacter sphaeroides 2.4.1) [Search protein sequence]
DTIPVFDGHNDFLLRLLRNPANRETIWLKGDGTGHLDLPRMKEGGFAGGF
FAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLL
WMERAARGRFKVCRTAAEVRSCHADGIVSGIMHMEGAEAIGADLDALHLF
HSLGLRSLGPVWSRPTVFGHGVPFRFPGSPDTGEGLTEAGRRLVAECNRL
KIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMI
RESRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMG
SDFDGATIPQGIADVTGLPALQAAMRAHGYDEPLMRKLCHENWYGLLERT
WG
3D structure
PDB3ly0 Crystal structure of metallo peptidase from Rhodobacter sphaeroides liganded with phosphinate mimic of dipeptide L-Ala-D-Ala
ChainB
Resolution1.399 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H11 D13 E137 W164 H210 H231 D304
Catalytic site (residue number reindexed from 1) H9 D11 E135 W162 H208 H229 D302
Enzyme Commision number 3.4.13.19: membrane dipeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LY0 B D13 Y56 H63 E137 W164 F176 H210 H231 R242 F267 D304 D11 Y54 H61 E135 W162 F174 H208 H229 R240 F265 D302
BS02 ZN B H11 D13 E137 H9 D11 E135
BS03 ZN B E137 H210 H231 E135 H208 H229
Gene Ontology
Molecular Function
GO:0016805 dipeptidase activity
GO:0046872 metal ion binding
GO:0070573 metallodipeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:3ly0, PDBe:3ly0, PDBj:3ly0
PDBsum3ly0
PubMed
UniProtQ3IZQ3

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