Structure of PDB 3kyg Chain B

Receptor sequence
>3kygB (length=227) Species: 666 (Vibrio cholerae) [Search protein sequence]
SKTVSTINSTDALAMVEHSSELTLSITTPVGTKFVCRTPFIGTHTDKFLL
VEMPKISADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVP
MAFLSIPNTMQVSQRRKEPRFELNLAGKVLFDEHRGDCELRDLSRSGCRF
ITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGL
EFNEEGRNNAKNLLAQLKFNGTKLTLN
3D structure
PDB3kyg Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
ChainB
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 5GP B R136 R140 R169 N208 Q210 R116 R120 R149 N188 Q190 PDBbind-CN: -logKd/Ki=7.46,Kd=34.3nM
BS02 5GP B R99 G100 Q134 R136 R79 G80 Q114 R116 PDBbind-CN: -logKd/Ki=7.46,Kd=34.3nM
BS03 5GP B R140 D162 S164 G167 C168 R169 C207 N208 G219 E221 R120 D142 S144 G147 C148 R149 C187 N188 G199 E201 PDBbind-CN: -logKd/Ki=7.46,Kd=34.3nM
BS04 5GP B E101 R135 R136 K137 E81 R115 R116 K117 PDBbind-CN: -logKd/Ki=7.46,Kd=34.3nM
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003674 molecular_function
GO:0005515 protein binding
GO:0035438 cyclic-di-GMP binding
Biological Process
GO:0008150 biological_process
Cellular Component
GO:0005575 cellular_component
GO:0009288 bacterial-type flagellum
GO:0009425 bacterial-type flagellum basal body

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3kyg, PDBe:3kyg, PDBj:3kyg
PDBsum3kyg
PubMed20226196
UniProtQ9KNC3|YCGRL_VIBCH Cyclic di-GMP binding protein VCA0042 (Gene Name=VC_A0042)

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