Structure of PDB 3km5 Chain B

Receptor sequence
>3km5B (length=173) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
ADFTETFESSTHGEAPAEWTTIDADGDGQGWLCLSSGQLDWLTAHGGSNV
VSSFSWNGMALNPDNYLISKDVTGATKVKYYYAVNDGFPGDHYAVMISKT
GTNAGDFTVVFEETPNGINKGGARFGLSTEAKPQSVWIERTVDLPAGTKY
VAFRHYNCSDLNYILLDDIQFTM
3D structure
PDB3km5 Structure determination and analysis of a haemolytic gingipain adhesin domain from Porphyromonas gingivalis
ChainB
Resolution1.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D1179 D1181 D1183 Q1185 N1221 D23 D25 D27 Q29 N65
BS02 CA B T1162 E1164 G1202 N1205 D1326 T6 E8 G46 N49 D167
External links
PDB RCSB:3km5, PDBe:3km5, PDBj:3km5
PDBsum3km5
PubMed20233299
UniProtP59915|HAGA1_PORGI Hemagglutinin A (Gene Name=hagA)

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