Structure of PDB 3kdu Chain B

Receptor sequence
>3kduB (length=271) Species: 9606 (Homo sapiens) [Search protein sequence]
SHMEDSETADLKSLAKRIYEAYLKNFNMNKVKARVILSGKANNPPFVIHD
METLCMAEKTLVVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPG
FANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKS
LRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGH
IEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQI
IKKTESDAALHPLLQEIYRDM
3D structure
PDB3kdu Discovery of an oxybenzylglycine based peroxisome proliferator activated receptor alpha selective agonist 2-((3-((2-(4-chlorophenyl)-5-methyloxazol-4-yl)methoxy)benzyl)(methoxycarbonyl)amino)acetic acid (BMS-687453).
ChainB
Resolution2.07 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NKS B A250 F273 C276 S280 Y314 I317 V332 F351 I354 M355 H440 A57 F77 C80 S84 Y118 I121 V136 F155 I158 M159 H244 MOAD: ic50=347nM
BindingDB: IC50=347nM,EC50=8nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005634 nucleus

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3kdu, PDBe:3kdu, PDBj:3kdu
PDBsum3kdu
PubMed20218621
UniProtQ07869|PPARA_HUMAN Peroxisome proliferator-activated receptor alpha (Gene Name=PPARA)

[Back to BioLiP]