Structure of PDB 3j16 Chain B

Receptor sequence

>3j16B (length=608) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFI
SEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTP
RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS
ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE
DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS
YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV
YGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSA
SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG
ALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD
VVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS
EQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH
ARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQKSSGNY
FFLDNTGI

3D structure

PDB

3j16 Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.

Chain

Resolution

7.2 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	B	R148 Q153 S309 R311 E312 R573 R582 I583 K585 D587	R148 Q153 S309 R311 E312 R573 R582 I583 K585 D587
BS02	rna	B	E332 R337	E332 R337
BS03	MG	B	S117 Q171	S117 Q171
BS04	ATP	B	Y87 F92 N112 G113 I114 G115 K116 S117 T118 S299	Y87 F92 N112 G113 I114 G115 K116 S117 T118 S299
BS05	SF4	B	C29 V31 C38 I39 I50 C55 I56 C58 G59 I60 C61	C29 V31 C38 I39 I50 C55 I56 C58 G59 I60 C61
BS06	SF4	B	C16 K17 P18 C21 R22 C65 P66 F67	C16 K17 P18 C21 R22 C65 P66 F67

Gene Ontology

	Molecular Function
GO:0003743	translation initiation factor activity
GO:0005506	iron ion binding
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0016887	ATP hydrolysis activity
GO:0043024	ribosomal small subunit binding

	Biological Process
GO:0000054	ribosomal subunit export from nucleus
GO:0006364	rRNA processing
GO:0006412	translation
GO:0006413	translational initiation
GO:0006415	translational termination
GO:0032790	ribosome disassembly
GO:0042254	ribosome biogenesis
GO:0042273	ribosomal large subunit biogenesis
GO:0045727	positive regulation of translation

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005852	eukaryotic translation initiation factor 3 complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:3j16, PDBe:3j16, PDBj:3j16
PDBsum	3j16
PubMed	22358840
UniProt	Q03195\|RLI1_YEAST Translation initiation factor RLI1 (Gene Name=RLI1)

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