Structure of PDB 3ijy Chain B

Receptor sequence
>3ijyB (length=221) Species: 10090 (Mus musculus) [Search protein sequence]
EVMLVESGGGLVQPGNSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGF
IRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCAR
DISPSYGVYYEGFAYWGQGTLVTVSAATTTAPSVYPLVPGGSSVTLGCLV
KGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQT
VICNVAHPASKTELIKRIEPR
3D structure
PDB3ijy The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen.
ChainB
Resolution2.85 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 KDO B Y33 R52 I96 E100E Y33 R52 I102 E111 PDBbind-CN: -logKd/Ki=6.04,Kd=0.91uM
BS02 MG B R52 E58 R52 E61
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