Structure of PDB 3iel Chain B

Receptor sequence
>3ielB (length=431) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPK
EVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKV
MDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVA
QGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRET
VREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLD
SPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKAL
NRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAE
IIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVH
GEEEKLLALGKLLALRGQEVSLARFGEGVPV
3D structure
PDB3iel Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
ChainB
Resolution2.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U5P B V12 T188 Y189 F223 R227 G340 Y341 S378 V12 T188 Y189 F223 R227 G340 Y341 S378
BS02 U5P B R2 L20 R25 F47 G426 G428 R2 L20 R25 F47 G426 G428
BS03 ZN B D63 H64 D162 H400 D63 H64 D162 H400
BS04 ZN B H59 H141 H59 H141
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3iel, PDBe:3iel, PDBj:3iel
PDBsum3iel
PubMed
UniProtQ5SLP1|RNSE_THET8 Ribonuclease TTHA0252 (Gene Name=TTHA0252)

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