Structure of PDB 3gzt Chain B

Receptor sequence
>3gztB (length=255) [Search protein sequence]
PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFL
TKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELAD
LILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGC
LTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPREN
VAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQII
QAMSK
3D structure
PDB3gzt Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM
ChainB
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B Q177 D228 D231 Q120 D171 D174
BS02 CA B T214 F215 E216 T157 F158 E159
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Biological Process
GO:0046813 receptor-mediated virion attachment to host cell
Cellular Component
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3gzt, PDBe:3gzt, PDBj:3gzt
PDBsum3gzt
PubMed19487668
UniProtP12476|VP7_ROTRH Outer capsid glycoprotein VP7

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