Structure of PDB 3g6n Chain B

Receptor sequence
>3g6nB (length=183) Species: 1352 (Enterococcus faecium) [Search protein sequence]
GSHMMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQD
PIKAEELHLRGGVGLAAPQLDISKRIIAVHVPSSLSTVMYNPKILSHSVQ
DACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIV
VQHEIDHINGVMFYDHINDQNPFALKEGVLVIE
3D structure
PDB3g6n Crystal structure of an EfPDF complex with Met-Ala-Ser based on crystallographic packing.
ChainB
Resolution2.5 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G60 Q65 C114 L115 H157 E158 H161
Catalytic site (residue number reindexed from 1) G64 Q69 C110 L111 H153 E154 H157
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B G57 G58 V59 G113 C114 L115 H157 G61 G62 V63 G109 C110 L111 H153
BS02 FE B Q65 C114 H157 H161 Q69 C110 H153 H157
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:3g6n, PDBe:3g6n, PDBj:3g6n
PDBsum3g6n
PubMed19249287
UniProtQ842S4

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