Structure of PDB 3d0v Chain B

Receptor sequence

>3d0vB (length=221) Species: 9606 (Homo sapiens) [Search protein sequence]

RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWL
AIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR
RGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLATAALGC
LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLQ
TYTCNVNHKPSNTKVDKRVEP

3D structure

PDB

3d0v Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.

Chain

Resolution

2.05 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	G33 Y52 D54 D56 R58 R95 P98 R100H V100K	G33 Y54 D56 D58 R60 R100 P103 R113 V116

External links

PDB	RCSB:3d0v, PDBe:3d0v, PDBj:3d0v
PDBsum	3d0v
PubMed	18824005
UniProt	Q8NF17

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