Structure of PDB 3c5m Chain B

Receptor sequence
>3c5mB (length=378) Species: 223926 (Vibrio parahaemolyticus RIMD 2210633) [Search protein sequence]
AKGDVITLNFETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLL
FAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE
LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP
LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDS
TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA
MAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDG
CDAPVNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFT
PNDDGVLFTSDFEGVPAIYIADVPESYK
3D structure
PDB3c5m Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus.
ChainB
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B H287 Q350 H353 H355 H286 Q341 H344 H346
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0047487 oligogalacturonide lyase activity
Biological Process
GO:0045490 pectin catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:3c5m, PDBe:3c5m, PDBj:3c5m
PDBsum3c5m
PubMed
UniProtQ87K10

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