Structure of PDB 3c3b Chain B

Receptor sequence
>3c3bB (length=398) Species: 9606 (Homo sapiens) [Search protein sequence]
LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLD
NGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVEK
ACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSK
LGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPER
PFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTS
LFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASG
IPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALM
DEVVKATSRGCITIIGGDKVSHVSTGGGASLELLEGKVLPGVDALSNI
3D structure
PDB3c3b Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase
ChainB
Resolution1.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R38 K215 G396
Catalytic site (residue number reindexed from 1) R37 K210 G378
Enzyme Commision number 2.7.2.3: phosphoglycerate kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PO4 B R65 R122 R170 R64 R117 R165
BS02 CDP B G213 A214 G237 G238 L256 F291 P338 V341 G208 A209 G232 G233 L251 F286 P333 V336
Gene Ontology
Molecular Function
GO:0004618 phosphoglycerate kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0043531 ADP binding
GO:0047134 protein-disulfide reductase (NAD(P)H) activity
Biological Process
GO:0006094 gluconeogenesis
GO:0006096 glycolytic process
GO:0016310 phosphorylation
GO:0016525 negative regulation of angiogenesis
GO:0030855 epithelial cell differentiation
GO:0031639 plasminogen activation
GO:0061621 canonical glycolysis
GO:0071456 cellular response to hypoxia
Cellular Component
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0045121 membrane raft
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3c3b, PDBe:3c3b, PDBj:3c3b
PDBsum3c3b
PubMed18463139
UniProtP00558|PGK1_HUMAN Phosphoglycerate kinase 1 (Gene Name=PGK1)

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