Structure of PDB 3c28 Chain B

Receptor sequence

>3c28B (length=315) Species: 2886926 (Escherichia phage P1) [Search protein sequence]

SDEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPE
DVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRR
IRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYN
TLLRIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTK
LVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATH
RLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVN
IVMNYIRGMVRLLED

3D structure

PDB

3c28 Detailed study on Synapsis in Cre-loxP recombination reaction

Chain

Resolution

2.6 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	M44 S47 R50 R81 L83 A84 K86 T87 Q90 R118 K132 Q156 R159 R173 K201 T202 R241 V242 K244 L256 S257 R259 R282 W315 T316 N317 N319 I320 Y324	M25 S28 R31 R62 L64 A65 K67 T68 Q71 R99 K113 Q137 R140 R154 K182 T183 R222 V223 K225 L237 S238 R240 R263 W296 T297 N298 N300 I301 Y305
BS02	dna	B	F37 S38 H40 T41 Q90 M97 R100 R101 R106 R121 I174 A175 R199 K201 R243 K244 R259 E262 R282 Y283 S287 G288 H289	F18 S19 H21 T22 Q71 M78 R81 R82 R87 R102 I155 A156 R180 K182 R224 K225 R240 E243 R263 Y264 S268 G269 H270

Gene Ontology

	Molecular Function
GO:0003677	DNA binding

	Biological Process
GO:0006310	DNA recombination
GO:0015074	DNA integration

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:3c28, PDBe:3c28, PDBj:3c28
PDBsum	3c28
PubMed
UniProt	P06956\|RECR_BPP1 Recombinase cre (Gene Name=cre)

[Back to BioLiP]