Structure of PDB 2ydp Chain B

Receptor sequence
>2ydpB (length=359) Species: 5518 (Fusarium graminearum) [Search protein sequence]
GKTFSNVEIFDPPTNYRDPQVLYARPLELSDGTLLGTWENYSPEPPNVWF
PIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLC
SGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEP
FLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKVVDDTKYANYY
ARPGMPTVAKLPNNEYIYVYAYGGGPNPPAGSDYWFPVYYRLSKDPQKFL
NKAHHQIVSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGTRSEIFTNQALG
DASAWKKWDVPQPTAYTRSLLTFQKDPDLLMIMGAGILPPAGGKNTVSAS
VVRLSEVMK
3D structure
PDB2ydp Alpha-L-Arabinofuranosylated Pyrrolidines as Arabinanase Inhibitors.
ChainB
Resolution1.85 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 EDG B W169 E170 Q195 M226 W148 E149 Q174 M205
BS02 AHR B E60 Y100 Q101 E39 Y79 Q80
BS03 CA B D32 P33 D11 P12
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:2ydp, PDBe:2ydp, PDBj:2ydp
PDBsum2ydp
PubMed21773614
UniProtB8ZY56

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