Structure of PDB 2y99 Chain B

Receptor sequence
>2y99B (length=267) Species: 285 (Comamonas testosteroni) [Search protein sequence]
MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG
GNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLP
EDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNG
GGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGVP
LADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMGVR
GFLTAAGGADLPEKLNI
3D structure
PDB2y99 Biochemical Studies and Ligand-Bound Structures of Biphenyl Dehydrogenase from Pandoraea Pnomenusa Strain B-356 Reveal a Basis for Broad Specificity of the Enzyme.
ChainB
Resolution2.5 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G16 S142 Y155 K159
Catalytic site (residue number reindexed from 1) G16 S142 Y155 K159
Enzyme Commision number 1.3.1.56: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD B G12 S15 G16 D36 K37 D59 V60 N86 G88 S142 Y155 K159 P184 M187 T189 L191 R192 G12 S15 G16 D36 K37 D59 V60 N86 G88 S142 Y155 K159 P184 M187 T189 L191 R192
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0018509 cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase activity
Biological Process
GO:0009056 catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:2y99, PDBe:2y99, PDBj:2y99
PDBsum2y99
PubMed21880718
UniProtQ46381|BPHB_COMTE Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (Gene Name=bphB)

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