Structure of PDB 2pok Chain B

Receptor sequence
>2pokB (length=456) Species: 170187 (Streptococcus pneumoniae TIGR4) [Search protein sequence]
VFPSEQEQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGE
IFKRVGAEVEIDESYTAPFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQV
WTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISF
IMEGAEESASTDLDKYLEKHADKLRGADLLVWEQGTKNALEQLEISGGNK
GIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGL
YEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFF
DPALNIEGIQSGYQGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQ
LDKNGFDKVELYYTLGEMSYRSDMSAPAILNVIELAKKFYPQGVSVLPTT
AGTGPMHTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEE
LIRSYE
3D structure
PDB2pok Crystal structure of a M20 family metallo peptidase from Streptococcus pneumoniae.
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC B D179 N382 S455 D178 N381 S454
BS02 BGC B Q256 N259 E262 R372 S373 D374 Q255 N258 E261 R371 S372 D373
BS03 MN B H90 D123 E157 E184 Q185 H89 D122 E156 E183 Q184
Gene Ontology
Molecular Function
GO:0009014 succinyl-diaminopimelate desuccinylase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0009089 lysine biosynthetic process via diaminopimelate
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2pok, PDBe:2pok, PDBj:2pok
PDBsum2pok
PubMed
UniProtA0A0H2UN21

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