Structure of PDB 2p8p Chain B

Receptor sequence

>2p8pB (length=221) Species: 9606 (Homo sapiens) [Search protein sequence]

RITLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWL
AIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR
RGPTTLFGVPIARGPVNAMDVWGQGITVTISSTSTKGPSVFPLAPTAALG
CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSQ
TYTCNVNHKPSNTKVDKRVEP

3D structure

PDB

2p8p Structural details of HIV-1 recognition by the broadly neutralizing monoclonal antibody 2F5: epitope conformation, antigen-recognition loop mobility, and anion-binding site.

Chain

Resolution

2.7 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	G33 Y52 D54 D56 R58 R95 P98 P100E A100G R100H V100K	G33 Y54 D56 D58 R60 R100 P103 P110 A112 R113 V116

External links

PDB	RCSB:2p8p, PDBe:2p8p, PDBj:2p8p
PDBsum	2p8p
PubMed	18824005

[Back to BioLiP]