Structure of PDB 2okl Chain B

Receptor sequence
>2oklB (length=184) Species: 226900 (Bacillus cereus ATCC 14579) [Search protein sequence]
MLTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMA
EKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVE
RTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIV
FQHEIDHLNGVMFYDHINKENPFAAPDDSKPLER
3D structure
PDB2okl Characterization of Peptide Deformylase2 from B. cereus
ChainB
Resolution1.7 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G60 Q65 C110 L111 H153 E154 H157
Catalytic site (residue number reindexed from 1) G60 Q65 C110 L111 H153 E154 H157
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C110 H153 H157 C110 H153 H157
BS02 BB2 B Q105 R184 Q105 R184
BS03 BB2 B R56 G58 I59 G60 Q65 E108 G109 C110 L111 I149 V150 H153 E154 H157 R56 G58 I59 G60 Q65 E108 G109 C110 L111 I149 V150 H153 E154 H157
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0043686 co-translational protein modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:2okl, PDBe:2okl, PDBj:2okl
PDBsum2okl
PubMed18047803
UniProtQ819K2|DEF2_BACCR Peptide deformylase 2 (Gene Name=def2)

[Back to BioLiP]