Structure of PDB 2j9p Chain B

Receptor sequence
>2j9pB (length=458) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
DALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPASSL
KLLTAAAALSVLGENYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPS
DFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPI
SALTASPNEDYDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTT
AAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWEPAGYALDLFK
QSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHA
EVLVKEMGKVKKGEGSWEKGLEVLNSTLPEFGVDSKSLVLRDGSGISHID
AVSSDQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPA
QGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLNGLIDEEDGKDIEDQ
IAVILANQ
3D structure
PDB2j9p Crystal structure of the Bacillus subtilis penicillin-binding protein 4a, and its complex with a peptidoglycan mimetic peptide.
ChainB
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.16.4: serine-type D-Ala-D-Ala carboxypeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 REZ B S52 D145 Y150 N301 I350 H352 G413 S414 L415 S416 S48 D141 Y146 N297 I346 H348 G409 S410 L411 S412
BS02 DAL B S299 T412 G413 S414 S295 T408 G409 S410
Gene Ontology
Molecular Function
GO:0004185 serine-type carboxypeptidase activity
GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0000270 peptidoglycan metabolic process
GO:0006508 proteolysis
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0051301 cell division
GO:0071555 cell wall organization
Cellular Component
GO:0005576 extracellular region
GO:0016020 membrane
GO:0045121 membrane raft

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2j9p, PDBe:2j9p, PDBj:2j9p
PDBsum2j9p
PubMed17582436
UniProtP39844|DACC_BACSU D-alanyl-D-alanine carboxypeptidase DacC (Gene Name=dacC)

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