Structure of PDB 2i2s Chain B

Receptor sequence
>2i2sB (length=163) Species: 10913 (Porcine rotavirus) [Search protein sequence]
GSLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPN
VQTTNRIYNLFGQQVTLSVENTSQTQWKFIDVSKTTPTGNYTQHGSLFST
PKLYAVMKFSGRIYTYNGTTPNATTGYYSTTNYDTVNMTSFCDFYIIPRN
QEEKCTEYINHGL
3D structure
PDB2i2s Insight into Host Cell Carbohydrate-recognition by Human and Porcine Rotavirus from Crystal Structures of the Virion Spike Associated Carbohydrate-binding Domain (VP8*)
ChainB
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MNA B N111 Q113 N50 Q52
BS02 MNA B R101 Y188 Y189 S190 R40 Y127 Y128 S129
Gene Ontology
Biological Process
GO:0019058 viral life cycle
Cellular Component
GO:0019028 viral capsid

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Biological Process
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Cellular Component
External links
PDB RCSB:2i2s, PDBe:2i2s, PDBj:2i2s
PDBsum2i2s
PubMed17306299
UniProtP0C6Y8|VP4_ROTP3 Outer capsid protein VP4

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