Structure of PDB 2gpy Chain B

Receptor sequence
>2gpyB (length=192) Species: 272558 (Halalkalibacterium halodurans C-125) [Search protein sequence]
LKHYLEKQIPARDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPAR
ILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRI
ELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLIL
SDNVLFNQWLLEHPQYDTRIFPVGDGIAISIKREEGHHHHHH
3D structure
PDB2gpy Crystal structure of putative O-methyltransferase from Bacillus halodurans
ChainB
Resolution1.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D133 K136 D159 N160
Catalytic site (residue number reindexed from 1) D126 K129 D152 N153
Enzyme Commision number 2.1.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B N160 D206 N153 D175
BS02 ZN B D144 H194 D137 H163
BS03 ZN B E29 E93 H97 E22 E86 H90
BS04 ZN B H48 K51 H41 K44
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0008168 methyltransferase activity
GO:0008171 O-methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0016300 tRNA (uridine) methyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0008033 tRNA processing
GO:0030488 tRNA methylation
GO:0032259 methylation

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Molecular Function
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Biological Process
External links
PDB RCSB:2gpy, PDBe:2gpy, PDBj:2gpy
PDBsum2gpy
PubMed
UniProtQ9KDE1

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