Structure of PDB 2gfq Chain B

Receptor sequence
>2gfqB (length=280) Species: 70601 (Pyrococcus horikoshii OT3) [Search protein sequence]
YFQGHMKVIMTTKVDKASMNIMNKLIENFGFKETEYVFEGNPVYKRGDVL
ILTTNDEMIYYDYLDREIENQLGFKPEIIAFASRHSSKQKLPALTTHVTG
NWGKAMYGGKDESFAVAIPSAMKLSLLKMSELNDLGWTVCYEATHHGPTE
LEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVLDNYEKGRSKFKVALGI
GGGHYAPKQTKRALEGDLAFGHILPKYAQPVSRDVMIKALNRFGEKVEAI
YVDWKGSRGETRQLAKSLAQELGLEFIKDG
3D structure
PDB2gfq Structure of hypothetical protein ph0006 from Pyrococcus horikoshii
ChainB
Resolution1.75 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.1.96: D-aminoacyl-tRNA deacylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B H92 H140 H141 E154 H97 H145 H146 E159
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0046872 metal ion binding
GO:0051499 D-aminoacyl-tRNA deacylase activity
Biological Process
GO:0019478 D-amino acid catabolic process
GO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity

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Molecular Function
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Biological Process
External links
PDB RCSB:2gfq, PDBe:2gfq, PDBj:2gfq
PDBsum2gfq
PubMed
UniProtO57774|DTDA_PYRHO D-aminoacyl-tRNA deacylase (Gene Name=dtdA)

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