Structure of PDB 2dvx Chain B

Receptor sequence
>2dvxB (length=324) Species: 267998 (Rhizobium sp. MTP-10005) [Search protein sequence]
MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAH
GIETMILSLNAPAVQAIPDRRKAIEIARRANDVLAEECAKRPDRFLAFAA
LPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPF
WGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRL
MASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLPPRYPAKRRFM
DYFNENFHITTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHASDWF
NATSIAEADRVKIGRTNARRLFKL
3D structure
PDB2dvx Crystal Structures of Nonoxidative Zn-Dependent 2,6-Dihydroxybenzoate (gamma-Resorcylate) Decarboxylase from Rhizobium sp. Strain MTP-10005
ChainB
Resolution1.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.1.1.103: gamma-resorcylate decarboxylase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 ZN B E8 H10 H164 D287 E8 H10 H164 D287
BS02 23A B H10 F23 H164 P185 F189 D287 F290 H10 F23 H164 P185 F189 D287 F290
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016831 carboxy-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0019748 secondary metabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:2dvx, PDBe:2dvx, PDBj:2dvx
PDBsum2dvx
PubMed
UniProtQ60GU1|GRDC_RHIS5 Gamma-resorcylate decarboxylase (Gene Name=graF)

[Back to BioLiP]