Structure of PDB 2cdp Chain B

Receptor sequence
>2cdpB (length=128) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence]
ASIAVEAENFNAVGGPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGNYT
ISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYL
SAGTHQVRLHGAGSNNWQWNLDKFTLSN
3D structure
PDB2cdp Family 6 Carbohydrate Binding Modules in Beta-Agarases Display Exquisite Selectivity for the Non- Reducing Termini of Agarose Chains.
ChainB
Resolution1.59 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B V69 W127 V59 W117
BS02 AAL B N39 Y40 W97 W127 N130 N29 Y30 W87 W117 N120
BS03 CA B E8 E10 T36 D132 E6 E8 T26 D122
BS04 CA B P26 Y40 N42 D45 P16 Y30 N32 D35
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:2cdp, PDBe:2cdp, PDBj:2cdp
PDBsum2cdp
PubMed16601125
UniProtQ6DN99

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