Structure of PDB 2bbv Chain B

Receptor sequence
>2bbvB (length=308) Species: 12285 (Black beetle virus) [Search protein sequence]
LTRLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKVVTRKDVLNQSINF
TANRDTFILIAPTPGVAYWVADVPAGTFPISTTTFNAVNFPGFNSMFGNA
AASRSDQVSSFRYASMNVGIYPTSNLMQFAGSITVWKCPVKLSNVQFPVA
TTPATSALVHTLVGLDGVLAVGPDNFSESFIKGVFSQSVCNEPDFEFSDI
LEGIQTLPPANVTVATSGQPFNLAAGAEAVSGIVGWGNMDTIVIRVSAPT
GAVNSAILKTWACLEYRPNPNAMLYQFGHDSPPCDEVALQEYRTVARSLP
VAVIAAQN
3D structure
PDB2bbv The refined three-dimensional structure of an insect virus at 2.8 A resolution.
ChainB
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B L64 K68 F71 A72 D75 F76 E346 V350 L354 Q362 N363 L9 K13 F16 A17 D20 F21 E291 V295 L299 Q307 N308
BS02 CA B D221 G273 D166 G218
BS03 CA B D249 E251 D194 E196
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:2bbv, PDBe:2bbv, PDBj:2bbv
PDBsum2bbv
PubMed8289282
UniProtP04329|CAPSD_BBV Capsid protein alpha (Gene Name=alpha)

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