Structure of PDB 2ayg Chain B

Receptor sequence
>2aygB (length=87) Species: 37122 (Human papillomavirus type 6a) [Search protein sequence]
SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHA
IVTVTYHSEEQRQQFLNVVKIPPTIRHKLGFMSMHLL
3D structure
PDB2ayg The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein.
ChainB
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R302 K349 P351 T353 R22 K70 P72 T74 PDBbind-CN: Kd=2nM
BS02 dna B S293 K297 R300 Y301 S315 T316 S13 K17 R20 Y21 S36 T37 PDBbind-CN: Kd=2nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
Biological Process
GO:0006275 regulation of DNA replication
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2ayg, PDBe:2ayg, PDBj:2ayg
PDBsum2ayg
PubMed16914454
UniProtQ84294|VE2_HPV6A Regulatory protein E2 (Gene Name=E2)

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