Structure of PDB 1z2w Chain B

Receptor sequence
>1z2wB (length=182) Species: 10090 (Mus musculus) [Search protein sequence]
MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLK
TLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLA
LLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSF
VLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
3D structure
PDB1z2w Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
ChainB
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B D8 H10 N39 H117 D8 H10 N39 H117
BS02 MN B N39 D62 H86 H115 N39 D62 H86 H115
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006896 Golgi to vacuole transport
GO:0015031 protein transport
GO:0032456 endocytic recycling
GO:0042147 retrograde transport, endosome to Golgi
Cellular Component
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0030904 retromer complex
GO:0030906 retromer, cargo-selective complex
GO:0043231 intracellular membrane-bounded organelle

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Cellular Component
External links
PDB RCSB:1z2w, PDBe:1z2w, PDBj:1z2w
PDBsum1z2w
PubMed15965486
UniProtQ9QZ88|VPS29_MOUSE Vacuolar protein sorting-associated protein 29 (Gene Name=Vps29)

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