Structure of PDB 1vl8 Chain B

Receptor sequence
>1vl8B (length=252) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence]
VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL
TEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPA
EEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVT
MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS
DPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT
AN
3D structure
PDB1vl8 Crystal structure of Gluconate 5-dehydrogenase (TM0441) from Thermotoga maritima at 2.07 A resolution
ChainB
Resolution2.07 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G20 S146 I157 Y160 K164
Catalytic site (residue number reindexed from 1) G17 S143 I154 Y157 K161
Enzyme Commision number 1.1.1.69: gluconate 5-dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAP B G16 R19 G20 L21 S40 R41 C66 D67 V68 A94 A95 G96 I97 V117 I144 S146 Y160 K164 P190 G191 Y193 T195 M197 T198 G13 R16 G17 L18 S37 R38 C63 D64 V65 A91 A92 G93 I94 V114 I141 S143 Y157 K161 P187 G188 Y190 T192 M194 T195
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:1vl8, PDBe:1vl8, PDBj:1vl8
PDBsum1vl8
PubMed
UniProtQ9WYS2

[Back to BioLiP]