Structure of PDB 1vgo Chain B

Receptor sequence
>1vgoB (length=235) Species: 29285 (Halobacterium sp. AUS-2) [Search protein sequence]
DLLNDGRPETLWLGIGTLLMLIGTFYFIARGWGVTDKEAREYYAITILVP
GIASAAYLAMFFGIGVTEVELASGTVLDIYYARYADWLFTTPLLLLDLAL
LAKVDRVTIGTLIGVDALMIVTGLIGALSKTPLARYTWWLFSTIAFLFVL
YYLLTSLRSAAAKRSEEVRSTFNTLTALVAVLWTAYPILWIVGTEGAGVV
GLGIETLAFMVLDVTAKVGFGFVLLRSRAILGETE
3D structure
PDB1vgo Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps
ChainB
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RET B W91 T95 M123 W143 S146 W187 Y190 P191 W194 K221 W87 T91 M119 W139 S142 W183 Y186 P187 W190 K217
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0009881 photoreceptor activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0007602 phototransduction
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1vgo, PDBe:1vgo, PDBj:1vgo
PDBsum1vgo
PubMed16540121
UniProtP29563|BACR2_HALS2 Archaerhodopsin-2

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