Structure of PDB 1u08 Chain B

Receptor sequence
>1u08B (length=378) Species: 562 (Escherichia coli) [Search protein sequence]
PLIPQSKLPTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQ
GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI
TALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAA
LLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHI
NFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEI
RKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE
SRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD
PFPHKLIRLCFAKKESTLLAAAERLRQL
3D structure
PDB1u08 Crystal structure and reactivity of YbdL from Escherichia coli identify a methionine aminotransferase function
ChainB
Resolution2.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.6.1.88: methionine transaminase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP B G99 A100 T101 Y125 N170 N174 D202 V204 Y205 S233 K236 K244 G91 A92 T93 Y117 N162 N166 D194 V196 Y197 S225 K228 K236
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005515 protein binding
GO:0008483 transaminase activity
GO:0010326 methionine-oxo-acid transaminase activity
GO:0016212 kynurenine-oxoglutarate transaminase activity
GO:0030170 pyridoxal phosphate binding
GO:0042803 protein homodimerization activity
Biological Process
GO:0009058 biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1u08, PDBe:1u08, PDBj:1u08
PDBsum1u08
PubMed15280032
UniProtP77806|YBDL_ECOLI Methionine aminotransferase (Gene Name=ybdL)

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