Structure of PDB 1opo Chain B

Receptor sequence
>1opoB (length=267) Species: 11986 (Carnation mottle virus) [Search protein sequence]
SMTMSKTELLSTVKGTTGVIPSFEDWVVSPRNVAVFPQLSLLATNFNKYR
ITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAA
QTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFDKADTVVGEL
FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQILK
ITKTSAEQPLQWVVYRM
3D structure
PDB1opo The atomic structure of Carnation Mottle Virus capsid protein
ChainB
Resolution3.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D158 D161 D77 D80
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1opo, PDBe:1opo, PDBj:1opo
PDBsum1opo
PubMed8307192
UniProtP04383|CAPSD_CARMV Capsid protein (Gene Name=ORF4)

[Back to BioLiP]