Structure of PDB 1ogd Chain B

Receptor sequence
>1ogdB (length=131) Species: 1423 (Bacillus subtilis) [Search protein sequence]
MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPA
FQDTAAVLAEEMAVEKVIAAAEIKASNQENAKFLENLFSEQEIEYLSHEE
FKLLTKDAKAVIRTGEFTPYANCILQAGVLF
3D structure
PDB1ogd Crystal Structures of Rbsd Leading to the Identification of Cytoplasmic Sugar-Binding Proteins with a Novel Folding Architecture
ChainB
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.4.99.62: D-ribose pyranase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RIP B D28 G30 L31 H98 Y120 D28 G30 L31 H98 Y120 MOAD: Kd=0.93mM
Gene Ontology
Molecular Function
GO:0016853 isomerase activity
GO:0016866 intramolecular transferase activity
GO:0016872 intramolecular lyase activity
GO:0048029 monosaccharide binding
GO:0062193 D-ribose pyranase activity
Biological Process
GO:0005996 monosaccharide metabolic process
GO:0019303 D-ribose catabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Cellular Component
External links
PDB RCSB:1ogd, PDBe:1ogd, PDBj:1ogd
PDBsum1ogd
PubMed12738765
UniProtP36946|RBSD_BACSU D-ribose pyranase (Gene Name=rbsD)

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