Structure of PDB 1o6e Chain B

Receptor sequence
>1o6eB (length=232) Species: 10376 (human gammaherpesvirus 4) [Search protein sequence]
APSVYVCGFVERPDAPPKDACLHLDPLTVKSQLPLKKPLPLTVEHLPDAP
VGSVFGLYQSSAGLFSAASITSGDFLSLLDSIYHDCDIAQSQRLPLPREP
KVEALHAWLPSLSLASLHPDIPQTTADGGKLSFFDHVSICALGRRRGTTA
VYGTDLAWVLKHFSDLEPSIAAQIENDANAAKRESGCPEDHPLPLTKLIA
KAIDAGFLRNRVETLRQDRGVANIPAESYLKA
3D structure
PDB1o6e The Crystal Structure of the Epstein-Barr Virus Protease Shows Rearrangement of the Processed C Terminus
ChainB
Resolution2.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H48 S116 A118 H139 R147 R148
Catalytic site (residue number reindexed from 1) H45 S113 A115 H136 R144 R145
Enzyme Commision number 3.4.21.97: assemblin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ISP B S116 L117 A118 G146 R147 S113 L114 A115 G143 R144
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1o6e, PDBe:1o6e, PDBj:1o6e
PDBsum1o6e
PubMed12421561
UniProtP03234|SCAF_EBVB9 Capsid scaffolding protein (Gene Name=BVRF2/BdRF1)

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