Structure of PDB 1nov Chain B

Receptor sequence
>1novB (length=309) Species: 12288 (Nodamura virus) [Search protein sequence]
NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSIT
FTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTS
ATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQT
VATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFE
FHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTP
TGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDI
PIAVACKDN
3D structure
PDB1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
ChainB
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B K68 A72 D75 F76 Q242 K349 I350 I354 D362 N363 K14 A18 D21 F22 Q191 K295 I296 I300 D308 N309
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum1nov
PubMed15299863
UniProtP12871|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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